Funded Prime allows the use of Expert Advisors and Indicators to help our traders support their trading decisions and strategies. For traders using any off-the-shelf EA's it is important that they ensure the settings used are customized in order to make their trades unique.
As long as this rule is followed then there should be no problem in using an EA that other traders with Funded Prime may be using also. This is important as an EA that consistently executes identical trades on multiple accounts could result in those accounts being flagged for copy trading.